Hai-Feng Chen

Publications (20)

Publications listed in the lab bibliography, across all years.

2024

Hossain Shadman, Jesse D. Ziebarth, Caleb E. Gallops, Ray Luo, Zhengxin Li, Hai-Feng Chen, Yongmei Wang (2024). Map conformational landscapes of intrinsically disordered proteins with polymer physics quantities. Biophysical Journal.

2020

Dong Song, Hao Liu, Ray Luo, Hai-Feng Chen (2020). Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. Journal of Chemical Information and Modeling.

2019

Yangpeng Zhang, Hao Liu, Sheng Yang, Ray Luo, Hai-Feng Chen (2019). Well-Balanced Force Field ff03CMAP for Folded and Disordered Proteins. Journal of Chemical Theory and Computation.

Hao Liu, Dong Song, Yangpeng Zhang, Sheng Yang, Ray Luo, Hai-Feng Chen (2019). Extensive tests and evaluation of the CHARMM36IDPSFF force field for intrinsically disordered proteins and folded proteins. Physical Chemistry Chemical Physics.

Quan Li, Ray Luo, Hai-Feng Chen (2019). Dynamical important residue network (DIRN): network inference via conformational change. Bioinformatics.

2018

Hao Liu, Xiang Guo, Jingcheng Han, Ray Luo, Hai-Feng Chen (2018). Order-disorder transition of intrinsically disordered kinase inducible transactivation domain of CREB. The Journal of Chemical Physics.

2017

Dong Song, Ray Luo, Hai-Feng Chen (2017). The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins. Journal of Chemical Information and Modeling.

Wei Ye, Tianle Qian, Hao Liu, Ray Luo, Hai-Feng Chen (2017). Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. Journal of Chemical Information and Modeling.

Tianle Qian, Jing Wo, Yan Zhang, Quanwei Song, Guoqiang Feng, Ray Luo, Shuangjin Lin, Geng Wu, Hai-Feng Chen (2017). Crystal Structure of StnA for the Biosynthesis of Antitumor Drug Streptonigrin Reveals a Unique Substrate Binding Mode. Scientific Reports.

Xiang Guo, Jincheng Han, Ray Luo, Hai-Feng Chen (2017). Correction: Conformation dynamics of the intrinsically disordered protein c-Myb with the ff99IDPs force field. RSC Advances.

2016

Jingxu Yang, Hao Liu, Xiaorui Liu, Chengbo Gu, Ray Luo, Hai-Feng Chen (2016). Synergistic Allosteric Mechanism of Fructose-1,6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. Journal of Chemical Information and Modeling.

Jinmai Zhang, Huajie Luo, Hao Liu, Wei Ye, Ray Luo, Hai-Feng Chen (2016). Synergistic Modification Induced Specific Recognition between Histone and TRIM24 via Fluctuation Correlation Network Analysis. Scientific Reports.

Wei Wang, Cheng Jiang, Jinmai Zhang, Wei Ye, Ray Luo, Hai-Feng Chen (2016). Dynamics Correlation Network for Allosteric Switching of PreQ1 Riboswitch. Scientific Reports.

Jin-Mai Zhang, Cheng Jiang, Wei Ye, Ray Luo, Hai-Feng Chen (2016). Allosteric pathways in tetrahydrofolate sensing riboswitch with dynamics correlation network. Molecular BioSystems.

2015

Wei Ye, Dingjue Ji, Wei Wang, Ray Luo, Hai-Feng Chen (2015). Test and Evaluation of <i>ff99IDPs</i> Force Field for Intrinsically Disordered Proteins. Journal of Chemical Information and Modeling.

Lishi Xu, Wei Ye, Cheng Jiang, Jingxu Yang, Jinmai Zhang, Yan Feng, Ray Luo, Hai-Feng Chen (2015). Recognition Mechanism between Lac Repressor and DNA with Correlation Network Analysis. The Journal of Physical Chemistry B.

2013

Wei Wang, Wei Ye, Qingfen Yu, Cheng Jiang, Jian Zhang, Ray Luo, Hai-Feng Chen (2013). Conformational Selection and Induced Fit in Specific Antibody and Antigen Recognition: SPE7 as a Case Study. The Journal of Physical Chemistry B.

2012

Wei Ye, Fang Qin, Jian Zhang, Ray Luo, Hai-Feng Chen (2012). Atomistic Mechanism of MicroRNA Translation Upregulation via Molecular Dynamics Simulations. PLoS ONE.

2008

Jun Wang, Chunhu Tan, Hai-Feng Chen, Ray Luo (2008). All-Atom Computer Simulations of Amyloid Fibrils Disaggregation. Biophysical Journal.

2007

Hai-Feng Chen, Ray Luo (2007). Binding Induced Folding in p53−MDM2 Complex. Journal of the American Chemical Society.