Ruxi Qi

Publications (11)

Publications listed in the lab bibliography, across all years.

2022

Han Han, Hiroki J. Nakaoka, Line Hofmann, Jeff Jiajing Zhou, Clinton Yu, Lisha Zeng, Junyu Nan, Gayoung Seo, Rebecca Elizabeth Vargas, Bing Yang, Ruxi Qi, Lee Bardwell, Dmitry A. Fishman, Ken W. Y. Cho, Lan Huang, Ray Luo, Rahul Warrior, Wenqi Wang (2022). The Hippo pathway kinases LATS1 and LATS2 attenuate cellular responses to heavy metals through phosphorylating MTF1. Nature Cell Biology.

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Xiong Chen, Shanping Ji, Zheyi Liu, Xiao Yuan, Congsheng Xu, Ruxi Qi, An He, Heng Zhao, Haiping Song, Chunlei Xiao, Weina Gao, Peng R. Chen, Ray Luo, Pengfei Li, Fangjun Wang, Xueming Yang, Ruijun Tian (2022). Motif-dependent immune co-receptor interactome profiling by photoaffinity chemical proteomics. Cell Chemical Biology.

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2021

Edward King, Ruxi Qi, Han Li, Ray Luo, Erick Aitchison (2021). Estimating the Roles of Protonation and Electronic Polarization in Absolute Binding Affinity Simulations. Journal of Chemical Theory and Computation.

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2020

Haixin Wei, Ruxi Qi, Junmei Wang, Piotr Cieplak, Yong Duan, Ray Luo (2020). Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations. The Journal of Chemical Physics.

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2019

Haixin Wei, Aaron Luo, Tianyin Qiu, Ray Luo, Ruxi Qi (2019). Improved Poisson–Boltzmann Methods for High-Performance Computing. Journal of Chemical Theory and Computation.

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D’Artagnan Greene, Ruxi Qi, Remy Nguyen, Tianyin Qiu, Ray Luo (2019). Heterogeneous Dielectric Implicit Membrane Model for the Calculation of MMPBSA Binding Free Energies. Journal of Chemical Information and Modeling.

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Haixin Wei, Ray Luo, Ruxi Qi (2019). An efficient second‐order poisson–boltzmann method. Journal of Computational Chemistry.

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2018

Ruxi Qi, Ray Luo (2018). Robustness and Efficiency of Poisson–Boltzmann Modeling on Graphics Processing Units. Journal of Chemical Information and Modeling.

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Han Han, Ruxi Qi, Jeff Jiajing Zhou, Albert Paul Ta, Bing Yang, Hiroki J. Nakaoka, Gayoung Seo, Kun-Liang Guan, Ray Luo, Wenqi Wang (2018). Regulation of the Hippo Pathway by Phosphatidic Acid-Mediated Lipid-Protein Interaction. Molecular Cell.

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Changhao Wang, D'Artagnan Greene, Li Xiao, Ruxi Qi, Ray Luo (2018). Recent Developments and Applications of the MMPBSA Method. Frontiers in Molecular Biosciences.

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2017

Ruxi Qi, Wesley M. Botello-Smith, Ray Luo (2017). Acceleration of Linear Finite-Difference Poisson–Boltzmann Methods on Graphics Processing Units. Journal of Chemical Theory and Computation.

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